Malaria-Profiler
Species identification, drug-resistance prediction and geographic-origin inference from Plasmodium whole-genome sequencing data.
What it does
Malaria-Profiler analyses parasite sequence data and returns a per-sample report. It is developed and hosted by the PathogenSeq lab.
Open the tool →- Organism
- Plasmodium spp.
- Input
- Whole-genome sequencing data
- Output
- Species identification
- Output
- Drug-resistance prediction
- Output
- Geographic-origin inference
PathogenSeq
The Applied Genomics Centre for Infectious Diseases. We combine 'omics, laboratory experiments and large-scale data analysis to study tuberculosis, malaria, disease vectors and antimicrobial resistance, and to inform public health, clinical practice and surveillance.
We run collaborative projects and hands-on 'omics and bioinformatics workshops to build genomic capacity in endemic settings.
LSHTM ITD
The lab is part of the Faculty of Infectious and Tropical Diseases (ITD) at the London School of Hygiene & Tropical Medicine. ITD houses the School's laboratory-based research, together with clinical and epidemiological work on infectious and tropical diseases.
LSHTM is a specialist postgraduate university for public and global health, founded in 1899 and based in Bloomsbury, London.